Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1047128..1047399 | Replicon | chromosome |
| Accession | NZ_CP116994 | ||
| Organism | Escherichia coli strain MLI108K1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1047166..1047269 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1047128..1047399 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL409_RS07055 | 1044285..1045724 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NL409_RS07060 | 1045842..1046078 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NL409_RS07065 | 1046183..1046374 | + | 192 | WP_000457842.1 | YebW family protein | - |
| NL409_RS07070 | 1046375..1047031 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1047128..1047399 | + | 272 | - | - | Antitoxin |
| - | 1047166..1047269 | - | 104 | - | - | Toxin |
| NL409_RS07075 | 1047427..1047768 | - | 342 | WP_000976476.1 | YebY family protein | - |
| NL409_RS07080 | 1047781..1048653 | - | 873 | WP_046464082.1 | copper homeostasis membrane protein CopD | - |
| NL409_RS07085 | 1048657..1049031 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NL409_RS07090 | 1049170..1049400 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NL409_RS07095 | 1049502..1050158 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NL409_RS07100 | 1050182..1050844 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269680 NZ_CP116994:c1047269-1047166 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT269680 NZ_CP116994:1047128-1047399 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
