Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995615..1995886 | Replicon | chromosome |
| Accession | NZ_CP116987 | ||
| Organism | Escherichia coli strain MLI107 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995745..1995848 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995615..1995886 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL408_RS09615 | 1992170..1992832 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NL408_RS09620 | 1992856..1993512 | - | 657 | WP_206311379.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NL408_RS09625 | 1993614..1993844 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NL408_RS09630 | 1993983..1994357 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NL408_RS09635 | 1994361..1995233 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| NL408_RS09640 | 1995246..1995587 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1995615..1995886 | - | 272 | - | - | Antitoxin |
| - | 1995745..1995848 | + | 104 | - | - | Toxin |
| NL408_RS09645 | 1995983..1996639 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| NL408_RS09650 | 1996640..1996831 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NL408_RS09655 | 1996936..1997172 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NL408_RS09660 | 1997290..1998729 | - | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269653 NZ_CP116987:1995745-1995848 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT269653 NZ_CP116987:c1995886-1995615 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
