Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1042873..1043122 | Replicon | chromosome |
| Accession | NZ_CP116976 | ||
| Organism | Escherichia coli strain CUVM53 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1042889..1042992 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1042873..1043122 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP10_RS05140 | 1039239..1040678 | + | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQP10_RS05145 | 1040796..1041032 | + | 237 | WP_001338166.1 | YebV family protein | - |
| PQP10_RS05150 | 1041137..1041328 | + | 192 | WP_001338167.1 | YebW family protein | - |
| PQP10_RS05155 | 1041329..1041977 | - | 649 | Protein_1020 | protein-serine/threonine phosphatase | - |
| PQP10_RS05160 | 1042160..1042857 | + | 698 | WP_103215986.1 | IS1-like element IS1A family transposase | - |
| - | 1042873..1043122 | + | 250 | - | - | Antitoxin |
| - | 1042889..1042992 | - | 104 | - | - | Toxin |
| PQP10_RS05165 | 1043150..1043491 | - | 342 | WP_000976472.1 | YebY family protein | - |
| PQP10_RS05170 | 1043504..1044376 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| PQP10_RS05175 | 1044380..1044754 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| PQP10_RS05180 | 1044893..1045123 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PQP10_RS05185 | 1045225..1045881 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PQP10_RS05190 | 1045905..1046567 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1025179..1048624 | 23445 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269590 NZ_CP116976:c1042992-1042889 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 250 bp
>AT269590 NZ_CP116976:1042873-1043122 [Escherichia coli]
CTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
TGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCG
GTTTTTTTAT
CTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
TGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCG
GTTTTTTTAT
