Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 323346..323617 | Replicon | chromosome |
| Accession | NZ_CP116970 | ||
| Organism | Escherichia coli strain CUVM3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 323476..323579 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 323346..323617 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP09_RS01545 | 319901..320563 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PQP09_RS01550 | 320587..321243 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PQP09_RS01555 | 321345..321575 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PQP09_RS01560 | 321714..322088 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PQP09_RS01565 | 322092..322964 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| PQP09_RS01570 | 322977..323318 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 323346..323617 | - | 272 | - | - | Antitoxin |
| - | 323476..323579 | + | 104 | - | - | Toxin |
| PQP09_RS01575 | 323714..324370 | + | 657 | WP_000812710.1 | protein-serine/threonine phosphatase | - |
| PQP09_RS01580 | 324371..324562 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PQP09_RS01585 | 324667..324903 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PQP09_RS01590 | 325021..326460 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269554 NZ_CP116970:323476-323579 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT269554 NZ_CP116970:c323617-323346 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
