Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2082530..2082801 | Replicon | chromosome |
| Accession | NZ_CP116931 | ||
| Organism | Escherichia coli strain MLI106K1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2082660..2082763 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2082530..2082801 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL422_RS10630 | 2079085..2079747 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NL422_RS10635 | 2079771..2080427 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NL422_RS10640 | 2080529..2080759 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NL422_RS10645 | 2080898..2081272 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NL422_RS10650 | 2081276..2082148 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| NL422_RS10655 | 2082161..2082502 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2082530..2082801 | - | 272 | - | - | Antitoxin |
| - | 2082660..2082763 | + | 104 | - | - | Toxin |
| NL422_RS10660 | 2082898..2083554 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| NL422_RS10665 | 2083555..2083746 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NL422_RS10670 | 2083851..2084087 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NL422_RS10675 | 2084205..2085644 | - | 1440 | WP_049068043.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2075220..2085650 | 10430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269499 NZ_CP116931:2082660-2082763 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT269499 NZ_CP116931:c2082801-2082530 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
