Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1900359..1900630 | Replicon | chromosome |
| Accession | NZ_CP116929 | ||
| Organism | Escherichia coli strain MLI105 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1900489..1900592 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1900359..1900630 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL421_RS09360 | 1896914..1897576 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NL421_RS09365 | 1897600..1898256 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NL421_RS09370 | 1898358..1898588 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NL421_RS09375 | 1898727..1899101 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NL421_RS09380 | 1899105..1899977 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| NL421_RS09385 | 1899990..1900331 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1900359..1900630 | - | 272 | - | - | Antitoxin |
| - | 1900489..1900592 | + | 104 | - | - | Toxin |
| NL421_RS09390 | 1900727..1901383 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NL421_RS09395 | 1901384..1901575 | - | 192 | WP_000457842.1 | YebW family protein | - |
| NL421_RS09400 | 1901680..1901916 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NL421_RS09405 | 1902034..1903473 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269479 NZ_CP116929:1900489-1900592 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT269479 NZ_CP116929:c1900630-1900359 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
