Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1805984..1806081 Replicon chromosome
Accession NC_017531
Organism Pantoea ananatis AJ13355

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1805984..1806081 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1805984..1806081 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PAJ_RS08270 1801203..1802825 - 1623 WP_014593869.1 alpha-glucoside-specific PTS transporter subunit IIBC -
PAJ_RS08275 1803105..1803809 + 705 WP_013026057.1 GntR family transcriptional regulator -
PAJ_RS08280 1804299..1805843 + 1545 WP_014593871.1 MCP four helix bundle domain-containing protein -
- 1805984..1806081 - 98 - - Toxin
PAJ_RS08285 1806196..1806543 - 348 WP_014593872.1 YebY family protein -
PAJ_RS08290 1806571..1807446 - 876 WP_019105102.1 copper homeostasis membrane protein CopD -
PAJ_RS08295 1807451..1807825 - 375 WP_014593874.1 copper homeostasis periplasmic binding protein CopC -
PAJ_RS08300 1807976..1808206 + 231 WP_019105100.1 DNA polymerase III subunit theta -
PAJ_RS08305 1808206..1808877 + 672 WP_014593875.1 exodeoxyribonuclease X -
PAJ_RS08310 1808861..1810933 - 2073 WP_014593876.1 prolyl oligopeptidase family serine peptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 98 bp

>T26946 NC_017531:c1806081-1805984 [Pantoea ananatis AJ13355]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT

Antitoxin


Download         Length: 98 bp

>AT26946 NC_017531:1805984-1806081 [Pantoea ananatis AJ13355]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References