Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1932926..1933197 | Replicon | chromosome |
| Accession | NZ_CP116916 | ||
| Organism | Escherichia coli strain MLI023K2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1933056..1933159 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1932926..1933197 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL417_RS10030 | 1929481..1930143 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NL417_RS10035 | 1930167..1930823 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NL417_RS10040 | 1930925..1931155 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NL417_RS10045 | 1931294..1931668 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NL417_RS10050 | 1931672..1932544 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| NL417_RS10055 | 1932557..1932898 | + | 342 | WP_072145846.1 | YebY family protein | - |
| - | 1932926..1933197 | - | 272 | - | - | Antitoxin |
| - | 1933056..1933159 | + | 104 | - | - | Toxin |
| NL417_RS10060 | 1933294..1933950 | + | 657 | WP_061344299.1 | protein-serine/threonine phosphatase | - |
| NL417_RS10065 | 1933951..1934142 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NL417_RS10070 | 1934247..1934483 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NL417_RS10075 | 1934601..1936040 | - | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269402 NZ_CP116916:1933056-1933159 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT269402 NZ_CP116916:c1933197-1932926 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
