Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ccdAB/CcdA(antitoxin)
Location 31999..32524 Replicon plasmid pXH2172-NDM
Accession NZ_CP116901
Organism Escherichia coli strain XH2172

Toxin (Protein)


Gene name ccdB Uniprot ID V0SSI5
Locus tag PH219_RS23345 Protein ID WP_001159868.1
Coordinates 32219..32524 (+) Length 102 a.a.

Antitoxin (Protein)


Gene name ccdA Uniprot ID A0A223LLB0
Locus tag PH219_RS23340 Protein ID WP_023909027.1
Coordinates 31999..32217 (+) Length 73 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PH219_RS23325 (29734) 29734..30867 + 1134 WP_000545983.1 DUF3800 domain-containing protein -
PH219_RS23330 (30887) 30887..31171 + 285 WP_000642771.1 hypothetical protein -
PH219_RS23335 (31168) 31168..31365 - 198 WP_000215657.1 hypothetical protein -
PH219_RS23340 (31999) 31999..32217 + 219 WP_023909027.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin
PH219_RS23345 (32219) 32219..32524 + 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin
PH219_RS23350 (32525) 32525..33331 + 807 WP_000016982.1 site-specific integrase -
PH219_RS23355 (34105) 34105..34860 + 756 WP_000852146.1 replication initiation protein RepE -
PH219_RS23360 (35448) 35448..36614 + 1167 WP_000772446.1 plasmid-partitioning protein SopA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid sul1 / tet(B) / aac(6')-Ib-cr / blaOXA-1 / blaTEM-1B / sul2 / aph(3'')-Ib / aph(6)-Id / blaNDM-5 / aadA5 / aac(3)-IId / mph(A) / dfrA12 - 1..103554 103554
- inside Integron aadA8b / qacE / aadA17 / dfrA12 - 1..103554 103553
- inside Integron aadA17 / qacE / dfrA12 / aadA8b - 1..103554 103553


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin CcdB

(2-100)

Antitoxin

Post-segregation antitoxin CcdA

(2-72)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 11706.51 Da        Isoelectric Point: 6.4674

>T269331 WP_001159868.1 NZ_CP116901:32219-32524 [Escherichia coli]
MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDKVSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEV
ADLSHRENDIKNAINLMFWGI

Download         Length: 306 bp

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 8354.31 Da        Isoelectric Point: 4.7405

>AT269331 WP_023909027.1 NZ_CP116901:31999-32217 [Escherichia coli]
MKQRITVTVDSDSYQLLKAYDVNISGLVSTTIQNEARRLRAERWKAENQEGMAEVARFIEMNGSFADENRDW

Download         Length: 219 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4VUB
PDB 2VUB
PDB 7EPI
PDB 7EPG
PDB 3VUB
PDB 1X75
PDB 1VUB
PDB 7EPJ
PDB 3HPW
PDB 3G7Z

Antitoxin

Source ID Structure
AlphaFold DB A0A223LLB0

References