Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2795129..2795676 Replicon chromosome
Accession NZ_CP116775
Organism Pseudomonas sp. 273

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag PKO50_RS13230 Protein ID WP_109933868.1
Coordinates 2795395..2795676 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PKO50_RS13225 Protein ID WP_275629965.1
Coordinates 2795129..2795347 (+) Length 73 a.a.

Genomic Context

PKO50_RS13215PKO50_RS13225PKO50_RS13230PKO50_RS13240PKO50_RS13255PKO50_RS13265PKO50_RS13235PKO50_RS13245PKO50_RS13260
Location: 2793323..2794318 (996 bp)
Type: Others
Protein ID: WP_275629964.1
Location: 2795129..2795347 (219 bp)
Type: Antitoxin
Protein ID: WP_275629965.1
Location: 2795395..2795676 (282 bp)
Type: Toxin
Protein ID: WP_109933868.1
Location: 2796602..2797036 (435 bp)
Type: Others
Protein ID: WP_109933870.1
Location: 2798460..2798675 (216 bp)
Type: Others
Protein ID: WP_009619935.1
Location: 2799255..2799632 (378 bp)
Type: Others
Protein ID: WP_109933873.1
Location: 2795807..2796157 (351 bp)
Type: Others
Protein ID: WP_275629966.1
Location: 2797333..2797752 (420 bp)
Type: Others
Protein ID: WP_275629967.1
Location: 2798893..2799111 (219 bp)
Type: Others
Protein ID: WP_109933872.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PKO50_RS132152793323..2794318+996WP_275629964.1NAD-dependent formate dehydrogenase-
PKO50_RS132252795129..2795347+219WP_275629965.1ribbon-helix-helix domain-containing proteinAntitoxin
PKO50_RS132302795395..2795676+282WP_109933868.1type II toxin-antitoxin system RelE/ParE family toxinToxin
PKO50_RS132352795807..2796157-351WP_275629966.1bacteriocin-
PKO50_RS132402796602..2797036+435WP_109933870.1hydrogenase-
PKO50_RS132452797333..2797752-420WP_275629967.1LytTR family DNA-binding domain-containing protein-
PKO50_RS132552798460..2798675+216WP_009619935.1hypothetical protein-
PKO50_RS132602798893..2799111-219WP_109933872.1hypothetical protein-
PKO50_RS132652799255..2799632+378WP_109933873.1S24 family peptidase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(1-91)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-40)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10541.99 Da        Isoelectric Point: 8.9222

>T269242 WP_109933868.1 NZ_CP116775:2795395-2795676 [Pseudomonas sp. 273]
VIYAPAAIRDLECLREYLRSRSPDAARRAAQAVVQATQALGNRPQVGRIIESLPVSFREWPIEFGDSGYVARYRIDNETI
VILAIRHQREAGY

Download         Length: 282 bp

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 8362.42 Da        Isoelectric Point: 6.4673

>AT269242 WP_275629965.1 NZ_CP116775:2795129-2795347 [Pseudomonas sp. 273]
MATSVKLDDAMMARIRNLAGMRQRSPHWIMREAIAQYVEREERREALNRETAVAWDEYQGTGKHVTSEAVNE

Download         Length: 219 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References