Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2795129..2795676 Replicon chromosome
Accession NZ_CP116775
Organism Pseudomonas sp. 273

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag PKO50_RS13230 Protein ID WP_109933868.1
Coordinates 2795395..2795676 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PKO50_RS13225 Protein ID WP_275629965.1
Coordinates 2795129..2795347 (+) Length 73 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PKO50_RS13215 2793323..2794318 + 996 WP_275629964.1 NAD-dependent formate dehydrogenase -
PKO50_RS13225 2795129..2795347 + 219 WP_275629965.1 ribbon-helix-helix domain-containing protein Antitoxin
PKO50_RS13230 2795395..2795676 + 282 WP_109933868.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PKO50_RS13235 2795807..2796157 - 351 WP_275629966.1 bacteriocin -
PKO50_RS13240 2796602..2797036 + 435 WP_109933870.1 hydrogenase -
PKO50_RS13245 2797333..2797752 - 420 WP_275629967.1 LytTR family DNA-binding domain-containing protein -
PKO50_RS13255 2798460..2798675 + 216 WP_009619935.1 hypothetical protein -
PKO50_RS13260 2798893..2799111 - 219 WP_109933872.1 hypothetical protein -
PKO50_RS13265 2799255..2799632 + 378 WP_109933873.1 S24 family peptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(1-91)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-40)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10541.99 Da        Isoelectric Point: 8.9222

>T269242 WP_109933868.1 NZ_CP116775:2795395-2795676 [Pseudomonas sp. 273]
VIYAPAAIRDLECLREYLRSRSPDAARRAAQAVVQATQALGNRPQVGRIIESLPVSFREWPIEFGDSGYVARYRIDNETI
VILAIRHQREAGY

Download         Length: 282 bp

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 8362.42 Da        Isoelectric Point: 6.4673

>AT269242 WP_275629965.1 NZ_CP116775:2795129-2795347 [Pseudomonas sp. 273]
MATSVKLDDAMMARIRNLAGMRQRSPHWIMREAIAQYVEREERREALNRETAVAWDEYQGTGKHVTSEAVNE

Download         Length: 219 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References