Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relB-parE/ParE-RHH |
Location | 2795129..2795676 | Replicon | chromosome |
Accession | NZ_CP116775 | ||
Organism | Pseudomonas sp. 273 |
Toxin (Protein)
Gene name | parE | Uniprot ID | - |
Locus tag | PKO50_RS13230 | Protein ID | WP_109933868.1 |
Coordinates | 2795395..2795676 (+) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | PKO50_RS13225 | Protein ID | WP_275629965.1 |
Coordinates | 2795129..2795347 (+) | Length | 73 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PKO50_RS13215 | 2793323..2794318 | + | 996 | WP_275629964.1 | NAD-dependent formate dehydrogenase | - |
PKO50_RS13225 | 2795129..2795347 | + | 219 | WP_275629965.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
PKO50_RS13230 | 2795395..2795676 | + | 282 | WP_109933868.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
PKO50_RS13235 | 2795807..2796157 | - | 351 | WP_275629966.1 | bacteriocin | - |
PKO50_RS13240 | 2796602..2797036 | + | 435 | WP_109933870.1 | hydrogenase | - |
PKO50_RS13245 | 2797333..2797752 | - | 420 | WP_275629967.1 | LytTR family DNA-binding domain-containing protein | - |
PKO50_RS13255 | 2798460..2798675 | + | 216 | WP_009619935.1 | hypothetical protein | - |
PKO50_RS13260 | 2798893..2799111 | - | 219 | WP_109933872.1 | hypothetical protein | - |
PKO50_RS13265 | 2799255..2799632 | + | 378 | WP_109933873.1 | S24 family peptidase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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