Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /Xre(antitoxin) |
Location | 1244071..1245210 | Replicon | chromosome |
Accession | NZ_CP116775 | ||
Organism | Pseudomonas sp. 273 |
Toxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | PKO50_RS06135 | Protein ID | WP_275629131.1 |
Coordinates | 1244440..1245210 (+) | Length | 257 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | A0A1A5D9R9 |
Locus tag | PKO50_RS06130 | Protein ID | WP_043271094.1 |
Coordinates | 1244071..1244439 (+) | Length | 123 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PKO50_RS06095 | 1239256..1240091 | - | 836 | Protein_1205 | 5'-nucleotidase, lipoprotein e(P4) family | - |
PKO50_RS06100 | 1240373..1241422 | + | 1050 | WP_275629127.1 | diguanylate cyclase | - |
PKO50_RS06105 | 1241410..1241781 | - | 372 | WP_275629128.1 | hypothetical protein | - |
PKO50_RS06110 | 1241857..1242198 | - | 342 | WP_089393110.1 | carboxymuconolactone decarboxylase family protein | - |
PKO50_RS06115 | 1242271..1242753 | - | 483 | WP_109936595.1 | GreA/GreB family elongation factor | - |
PKO50_RS06120 | 1242882..1243334 | + | 453 | WP_275629129.1 | hypothetical protein | - |
PKO50_RS06125 | 1243341..1243781 | - | 441 | WP_275629130.1 | RcnB family protein | - |
PKO50_RS06130 | 1244071..1244439 | + | 369 | WP_043271094.1 | DUF2384 domain-containing protein | Antitoxin |
PKO50_RS06135 | 1244440..1245210 | + | 771 | WP_275629131.1 | RES family NAD+ phosphorylase | Toxin |
PKO50_RS06140 | 1245286..1245492 | + | 207 | WP_109936600.1 | hypothetical protein | - |
PKO50_RS06145 | 1246019..1247383 | + | 1365 | WP_275630427.1 | DNA recombination protein RmuC | - |
PKO50_RS06150 | 1247712..1248599 | - | 888 | WP_109936601.1 | metal-dependent hydrolase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 257 a.a. Molecular weight: 28882.02 Da Isoelectric Point: 7.1070
>T269238 WP_275629131.1 NZ_CP116775:1244440-1245210 [Pseudomonas sp. 273]
MAPDVGAELWRECRGEQAIAPLRGKLVRLVESQEQVATLQLVDTLEEQALLEELIETSKPHLPPSSETLHYLLKTPFRYP
PLRWGSRFGRRHEPSLFYAALRLETAMAEGAYYRFVLWEGMASPPPSGRILSEHASFEARFQVQRGIRLQAPPFDRYAER
LQDPRDYHLSQALGSAMRAAAVEAFEYRSARCPEGGLNAALFVPSAFVDKRPRNLMPWLCETTADYVAFKHAQVPGAPRL
FPRAGFLVEGDLPHPA
MAPDVGAELWRECRGEQAIAPLRGKLVRLVESQEQVATLQLVDTLEEQALLEELIETSKPHLPPSSETLHYLLKTPFRYP
PLRWGSRFGRRHEPSLFYAALRLETAMAEGAYYRFVLWEGMASPPPSGRILSEHASFEARFQVQRGIRLQAPPFDRYAER
LQDPRDYHLSQALGSAMRAAAVEAFEYRSARCPEGGLNAALFVPSAFVDKRPRNLMPWLCETTADYVAFKHAQVPGAPRL
FPRAGFLVEGDLPHPA
Download Length: 771 bp
Antitoxin
Download Length: 123 a.a. Molecular weight: 13395.70 Da Isoelectric Point: 10.8284
>AT269238 WP_043271094.1 NZ_CP116775:1244071-1244439 [Pseudomonas sp. 273]
MSALIRETPSADLVLAKAVLAAREQLGMTQQELAAIVGVDRSAVSRWKSGGLRVGSKTGELALLLVRVYRALFALFGGNL
EDMRHFLRTPNRHLSGVPLQRMEQVQGLVQVVEYLDAIRGKI
MSALIRETPSADLVLAKAVLAAREQLGMTQQELAAIVGVDRSAVSRWKSGGLRVGSKTGELALLLVRVYRALFALFGGNL
EDMRHFLRTPNRHLSGVPLQRMEQVQGLVQVVEYLDAIRGKI
Download Length: 369 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|