Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yoeB-relE/YoeB-RelB
Location 2778214..2778725 Replicon chromosome
Accession NZ_CP116770
Organism Brevundimonas sp. 2003-09-23

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag PIB44_RS13650 Protein ID WP_227157471.1
Coordinates 2778465..2778725 (+) Length 87 a.a.

Antitoxin (Protein)


Gene name relE Uniprot ID -
Locus tag PIB44_RS13645 Protein ID WP_278069776.1
Coordinates 2778214..2778468 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PIB44_RS13625 2773939..2774352 + 414 WP_025977731.1 DoxX family protein -
PIB44_RS13630 2774533..2775021 + 489 WP_025977732.1 MerR family DNA-binding transcriptional regulator -
PIB44_RS13635 2775026..2776807 + 1782 WP_278069774.1 acyl-CoA dehydrogenase C-terminal domain-containing protein -
PIB44_RS13640 2777009..2778172 + 1164 WP_278069775.1 acyl-CoA dehydrogenase family protein -
PIB44_RS13645 2778214..2778468 + 255 WP_278069776.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
PIB44_RS13650 2778465..2778725 + 261 WP_227157471.1 Txe/YoeB family addiction module toxin Toxin
PIB44_RS13655 2778732..2780246 - 1515 WP_278069777.1 AarF/UbiB family protein -
PIB44_RS13660 2780341..2781060 + 720 WP_278069778.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
PIB44_RS13665 2781130..2782491 + 1362 WP_278069779.1 glutamate--cysteine ligase -
PIB44_RS13670 2782488..2783282 - 795 WP_278069780.1 TSUP family transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 10368.76 Da        Isoelectric Point: 9.0274

>T269229 WP_227157471.1 NZ_CP116770:2778465-2778725 [Brevundimonas sp. 2003-09-23]
MKLTFQEEGWEDYLYWQSADRKQLKKINGLIRECLRTPFSGTGKPEPLKGEFSGWWSRRIDQEHRLVYRATDDTLLIAQC
RYHYGR

Download         Length: 261 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9202.34 Da        Isoelectric Point: 4.5994

>AT269229 WP_278069776.1 NZ_CP116770:2778214-2778468 [Brevundimonas sp. 2003-09-23]
MNAISVSELRKNLAATIDRVTADHDYTIITREGGKPAAVLMSLEDFASWQETEYLLRSPANAARLRKAVAELDAGEGQAR
DLVE

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References