Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 161639..162144 Replicon chromosome
Accession NZ_CP116720
Organism Pseudomonas aeruginosa strain 2866

Toxin (Protein)


Gene name parE Uniprot ID V6A7K8
Locus tag PMJ84_RS00770 Protein ID WP_003083773.1
Coordinates 161639..161920 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A1C7BDS9
Locus tag PMJ84_RS00775 Protein ID WP_003083775.1
Coordinates 161917..162144 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PMJ84_RS00745 (PMJ84_00745) 156890..158239 + 1350 WP_003142411.1 C4-dicarboxylate transporter DctA -
PMJ84_RS00750 (PMJ84_00750) 158288..158974 + 687 WP_003083762.1 FadR/GntR family transcriptional regulator -
PMJ84_RS00755 (PMJ84_00755) 159075..159809 + 735 WP_004346926.1 GntR family transcriptional regulator -
PMJ84_RS00760 (PMJ84_00760) 159989..160399 + 411 WP_003101225.1 aegerolysin family protein -
PMJ84_RS00765 (PMJ84_00765) 160431..161339 - 909 WP_003083769.1 LysR family transcriptional regulator -
PMJ84_RS00770 (PMJ84_00770) 161639..161920 - 282 WP_003083773.1 type II toxin-antitoxin system toxin ParE Toxin
PMJ84_RS00775 (PMJ84_00775) 161917..162144 - 228 WP_003083775.1 CopG family ribbon-helix-helix protein Antitoxin
PMJ84_RS00780 (PMJ84_00780) 162320..162940 - 621 WP_003101226.1 hypothetical protein -
PMJ84_RS00785 (PMJ84_00785) 163041..163541 + 501 WP_003101228.1 LEA type 2 family protein -
PMJ84_RS00790 (PMJ84_00790) 163614..163955 + 342 WP_003101229.1 zinc ribbon domain-containing protein YjdM -
PMJ84_RS00795 (PMJ84_00795) 164037..165464 - 1428 WP_003083784.1 GABA permease -
PMJ84_RS00800 (PMJ84_00800) 165633..167126 - 1494 WP_003083788.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10462.19 Da        Isoelectric Point: 10.0435

>T269171 WP_003083773.1 NZ_CP116720:c161920-161639 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Download         Length: 282 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8556.58 Da        Isoelectric Point: 5.5740

>AT269171 WP_003083775.1 NZ_CP116720:c162144-161917 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6XRW

Antitoxin

Source ID Structure
AlphaFold DB A0A1C7BDS9

References