Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 499573..500120 Replicon plasmid pAtCG920
Accession NZ_CP116698
Organism Agrobacterium fabacearum strain CG920

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag G6L96_RS26370 Protein ID WP_174012706.1
Coordinates 499573..499866 (-) Length 98 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag G6L96_RS26375 Protein ID WP_174012705.1
Coordinates 499866..500120 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G6L96_RS26355 (G6L96_026355) 495349..496281 + 933 WP_174012708.1 alpha/beta hydrolase -
G6L96_RS26360 (G6L96_026360) 496346..497164 + 819 WP_212509295.1 SDR family oxidoreductase -
G6L96_RS26365 (G6L96_026365) 497513..498532 + 1020 WP_174012707.1 alpha/beta hydrolase -
G6L96_RS26370 (G6L96_026370) 499573..499866 - 294 WP_174012706.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
G6L96_RS26375 (G6L96_026375) 499866..500120 - 255 WP_174012705.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
G6L96_RS26380 (G6L96_026380) 500456..500752 + 297 WP_174012994.1 type II toxin-antitoxin system HigB family toxin -
G6L96_RS26385 (G6L96_026385) 500752..501147 + 396 WP_097099154.1 type II toxin-antitoxin system HigA family antitoxin -
G6L96_RS26390 (G6L96_026390) 501197..501454 + 258 WP_174012695.1 hypothetical protein -
G6L96_RS26395 (G6L96_026395) 501594..501857 + 264 Protein_480 IS6 family transposase -
G6L96_RS26400 (G6L96_026400) 501867..503237 - 1371 WP_174012694.1 PLP-dependent aminotransferase family protein -
G6L96_RS26405 (G6L96_026405) 503498..503980 + 483 WP_174012693.1 MSMEG_0572 family nitrogen starvation response protein -
G6L96_RS26410 (G6L96_026410) 504049..505038 + 990 WP_112961636.1 Nit6803 family nitriliase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid - - 1..719769 719769


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Antitoxin ParD

(1-77)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11133.79 Da        Isoelectric Point: 5.8932

>T269136 WP_174012706.1 NZ_CP116698:c499866-499573 [Agrobacterium fabacearum]
MPFSLSVQAEEDIISIAEEGIRIFGALVARQYHDELFALLELIATNPKMARERHEISPPVRIHPFKAHLVVYRIIEDGSV
FIIRIRHGHEDWAGDSF

Download         Length: 294 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9267.37 Da        Isoelectric Point: 8.5779

>AT269136 WP_174012705.1 NZ_CP116698:c500120-499866 [Agrobacterium fabacearum]
MATMNVSLPDPMKDWVEAQAKTGRYSNASDYVRDLIRRDQARTDKIAEMQGFVDDGIRSGVGSRSTEELFALATSRAAIS
RGRA

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References