Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 1888736..1889228 Replicon chromosome
Accession NZ_CP116688
Organism Agrobacterium tumefaciens strain LMG 292

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag G6L31_RS09340 Protein ID WP_080824563.1
Coordinates 1888959..1889228 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag G6L31_RS09335 Protein ID WP_080824564.1
Coordinates 1888736..1888978 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G6L31_RS09315 (G6L31_009315) 1883981..1884973 + 993 WP_173987480.1 glutathione S-transferase family protein -
G6L31_RS09320 (G6L31_009320) 1884990..1885481 - 492 WP_173987381.1 NUDIX domain-containing protein -
G6L31_RS09325 (G6L31_009325) 1885548..1886498 + 951 WP_173987382.1 metallophosphoesterase -
G6L31_RS09330 (G6L31_009330) 1886708..1888417 - 1710 WP_173987383.1 2-isopropylmalate synthase -
G6L31_RS09335 (G6L31_009335) 1888736..1888978 - 243 WP_080824564.1 CopG family antitoxin Antitoxin
G6L31_RS09340 (G6L31_009340) 1888959..1889228 - 270 WP_080824563.1 BrnT family toxin Toxin
G6L31_RS09345 (G6L31_009345) 1889263..1890441 - 1179 WP_173987384.1 benzoate/H(+) symporter BenE family transporter -
G6L31_RS09350 (G6L31_009350) 1890525..1891169 - 645 WP_173987385.1 NrsF family protein -
G6L31_RS09355 (G6L31_009355) 1891166..1891681 - 516 WP_233284193.1 sigma-70 family RNA polymerase sigma factor -
G6L31_RS09360 (G6L31_009360) 1891900..1892157 + 258 WP_173987386.1 pentapeptide MXKDX repeat protein -
G6L31_RS09365 (G6L31_009365) 1892255..1892836 - 582 WP_080824559.1 ATP-dependent Clp protease proteolytic subunit -
G6L31_RS09370 (G6L31_009370) 1893069..1893659 + 591 WP_173987387.1 HupE/UreJ family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(5-80)

Antitoxin

CopG antitoxin

(6-71)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10798.24 Da        Isoelectric Point: 9.4618

>T269126 WP_080824563.1 NZ_CP116688:c1889228-1888959 [Agrobacterium tumefaciens]
MDFEFDPAKSESNKDKHGIDFVEARALWLDKKRLVVPLETTSEERYIMIAQLRGKCWSAVYTYRNDRLRIISVRRSRDKE
KQRYEDDQR

Download         Length: 270 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9164.42 Da        Isoelectric Point: 4.6942

>AT269126 WP_080824564.1 NZ_CP116688:c1888978-1888736 [Agrobacterium tumefaciens]
MKTINAEDFDKKFDDGEDLDDYIDWSKAGRPGLEMVHVDIDLPEKVLRRVDAEAARLGMTRQSLMAKWIAERLETGRVGK

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References