Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 574511..575118 Replicon chromosome
Accession NZ_CP116688
Organism Agrobacterium tumefaciens strain LMG 292

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag G6L31_RS02845 Protein ID WP_173986510.1
Coordinates 574511..574846 (-) Length 112 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag G6L31_RS02850 Protein ID WP_173986511.1
Coordinates 574843..575118 (-) Length 92 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G6L31_RS02830 (G6L31_002830) 570554..572743 - 2190 WP_173986508.1 transglycosylase domain-containing protein -
G6L31_RS02835 (G6L31_002835) 572999..573490 + 492 WP_173986558.1 YcgN family cysteine cluster protein -
G6L31_RS02840 (G6L31_002840) 573659..574483 + 825 WP_173986509.1 class D beta-lactamase -
G6L31_RS02845 (G6L31_002845) 574511..574846 - 336 WP_173986510.1 type II toxin-antitoxin system YafQ family toxin Toxin
G6L31_RS02850 (G6L31_002850) 574843..575118 - 276 WP_173986511.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
G6L31_RS02855 (G6L31_002855) 575327..577909 + 2583 WP_173986512.1 heavy metal translocating P-type ATPase -
G6L31_RS02860 (G6L31_002860) 577906..578328 + 423 WP_173986513.1 Cu(I)-responsive transcriptional regulator -
G6L31_RS02865 (G6L31_002865) 578380..578580 + 201 WP_173986514.1 heavy-metal-associated domain-containing protein -
G6L31_RS02870 (G6L31_002870) 578657..578926 + 270 WP_173986515.1 type II toxin-antitoxin system ParD family antitoxin -
G6L31_RS02875 (G6L31_002875) 578916..579275 + 360 WP_173986516.1 type II toxin-antitoxin system RelE/ParE family toxin -
G6L31_RS02880 (G6L31_002880) 579272..579520 - 249 WP_173986517.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(23-110)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-86)


Sequences

Toxin        


Download         Length: 112 a.a.        Molecular weight: 12934.81 Da        Isoelectric Point: 9.6009

>T269125 WP_173986510.1 NZ_CP116688:c574846-574511 [Agrobacterium tumefaciens]
VTDKKGHGKDAAAKRTVLPRSSDFTKQFIKDWQRLNNSGRYDMVKLKEIMLLLIANEAPLPAQFRDHELTGEWHDHRECH
VGGNFLLIYKLDEKQNFLIFTRAGTHAELFR

Download         Length: 336 bp

Antitoxin


Download         Length: 92 a.a.        Molecular weight: 9937.45 Da        Isoelectric Point: 5.8375

>AT269125 WP_173986511.1 NZ_CP116688:c575118-574843 [Agrobacterium tumefaciens]
MTANAYVRARIDPALKDDATAVLDSLGLTVSDVMRMMLTRIAREKALPIELTQPNAETLAAIEEARAIAAARHNRFVTAE
ALFEALDGNKR

Download         Length: 276 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References