Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1923641..1923746 | Replicon | chromosome |
| Accession | NZ_CP116675 | ||
| Organism | Edwardsiella tarda strain SC002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1923641..1923743 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1923641..1923746 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA77_RS08920 (PHA77_08920) | 1918787..1919413 | + | 627 | WP_005286281.1 | response regulator | - |
| PHA77_RS08925 (PHA77_08925) | 1919482..1919760 | + | 279 | WP_005286287.1 | DUF134 domain-containing protein | - |
| PHA77_RS08930 (PHA77_08930) | 1919773..1920237 | + | 465 | WP_047059852.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| PHA77_RS08935 (PHA77_08935) | 1920426..1921151 | + | 726 | WP_047059851.1 | hypothetical protein | - |
| PHA77_RS08940 (PHA77_08940) | 1921259..1921705 | - | 447 | WP_223931124.1 | YcgJ family protein | - |
| PHA77_RS08945 (PHA77_08945) | 1921833..1923263 | - | 1431 | WP_230455990.1 | cyclic diguanylate phosphodiesterase | - |
| - | 1923641..1923743 | + | 103 | - | - | Toxin |
| - | 1923641..1923746 | - | 106 | - | - | Antitoxin |
| PHA77_RS08950 (PHA77_08950) | 1924399..1924749 | + | 351 | WP_109610401.1 | helix-turn-helix transcriptional regulator | - |
| PHA77_RS08955 (PHA77_08955) | 1924749..1925309 | + | 561 | WP_279508068.1 | ImmA/IrrE family metallo-endopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1921259..1990509 | 69250 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T269098 NZ_CP116675:1923641-1923743 [Edwardsiella tarda]
GGCAAGGCGATCCATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCACAAGAGCCATTCCCCTAGACCTGATACA
GGAATCGTGTCAGGTCTTTTTTT
GGCAAGGCGATCCATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCACAAGAGCCATTCCCCTAGACCTGATACA
GGAATCGTGTCAGGTCTTTTTTT
Antitoxin
Download Length: 106 bp
>AT269098 NZ_CP116675:c1923746-1923641 [Edwardsiella tarda]
GATAAAAAAAGACCTGACACGATTCCTGTATCAGGTCTAGGGGAATGGCTCTTGTGGAGAGCCGTGCGCTAAAAGTTGGC
ATTATGCAGGCATGGATCGCCTTGCC
GATAAAAAAAGACCTGACACGATTCCTGTATCAGGTCTAGGGGAATGGCTCTTGTGGAGAGCCGTGCGCTAAAAGTTGGC
ATTATGCAGGCATGGATCGCCTTGCC
