Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | Txe-Axe/Txe-RelB |
Location | 1090411..1090930 | Replicon | chromosome |
Accession | NZ_CP116581 | ||
Organism | Enterococcus durans strain R59-1 |
Toxin (Protein)
Gene name | Txe | Uniprot ID | A0A377L4K5 |
Locus tag | PML98_RS04940 | Protein ID | WP_005878588.1 |
Coordinates | 1090673..1090930 (+) | Length | 86 a.a. |
Antitoxin (Protein)
Gene name | Axe | Uniprot ID | A0A367CD15 |
Locus tag | PML98_RS04935 | Protein ID | WP_005878590.1 |
Coordinates | 1090411..1090680 (+) | Length | 90 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PML98_RS04905 (PML98_04905) | 1085545..1086432 | + | 888 | WP_271852924.1 | site-specific tyrosine recombinase XerD | - |
PML98_RS04910 (PML98_04910) | 1086451..1086822 | + | 372 | WP_005878601.1 | GNAT family N-acetyltransferase | - |
PML98_RS04915 (PML98_04915) | 1086819..1087589 | + | 771 | WP_025479929.1 | segregation/condensation protein A | - |
PML98_RS04920 (PML98_04920) | 1087573..1088148 | + | 576 | WP_005878596.1 | SMC-Scp complex subunit ScpB | - |
PML98_RS04925 (PML98_04925) | 1088148..1088864 | + | 717 | WP_005878594.1 | pseudouridine synthase | - |
PML98_RS04930 (PML98_04930) | 1089196..1089804 | + | 609 | WP_005878592.1 | ECF transporter S component | - |
PML98_RS04935 (PML98_04935) | 1090411..1090680 | + | 270 | WP_005878590.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
PML98_RS04940 (PML98_04940) | 1090673..1090930 | + | 258 | WP_005878588.1 | Txe/YoeB family addiction module toxin | Toxin |
PML98_RS04945 (PML98_04945) | 1091295..1091894 | + | 600 | WP_271852926.1 | hypothetical protein | - |
PML98_RS04950 (PML98_04950) | 1091909..1092355 | + | 447 | WP_271852927.1 | hypothetical protein | - |
PML98_RS04955 (PML98_04955) | 1093050..1094573 | + | 1524 | WP_005878582.1 | YfcC family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A377L4K5 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A367CD15 |