Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1039039..1039310 | Replicon | chromosome |
| Accession | NZ_CP116480 | ||
| Organism | Escherichia coli strain GTEN_24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1039077..1039180 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1039039..1039310 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5Q65_RS05215 | 1036196..1037635 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E5Q65_RS05220 | 1037753..1037989 | + | 237 | WP_001295499.1 | YebV family protein | - |
| E5Q65_RS05225 | 1038094..1038285 | + | 192 | WP_001296140.1 | YebW family protein | - |
| E5Q65_RS05230 | 1038286..1038942 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 1039039..1039310 | + | 272 | - | - | Antitoxin |
| - | 1039077..1039180 | - | 104 | - | - | Toxin |
| E5Q65_RS05235 | 1039338..1039679 | - | 342 | WP_000976472.1 | YebY family protein | - |
| E5Q65_RS05240 | 1039692..1040564 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| E5Q65_RS05245 | 1040568..1040942 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| E5Q65_RS05250 | 1041081..1041311 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E5Q65_RS05255 | 1041413..1042069 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| E5Q65_RS05260 | 1042093..1042755 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268743 NZ_CP116480:c1039180-1039077 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT268743 NZ_CP116480:1039039-1039310 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
