Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 1718012..1718537 Replicon chromosome
Accession NZ_CP116478
Organism Pseudomonas syringae pv. actinidiae strain PSA.AH.01

Toxin (Protein)


Gene name relE Uniprot ID A0A0K8M609
Locus tag PHA47_RS07760 Protein ID WP_017684329.1
Coordinates 1718012..1718302 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A0K8M645
Locus tag PHA47_RS07765 Protein ID WP_017684328.1
Coordinates 1718292..1718537 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PHA47_RS07745 (PHA47_07745) 1713284..1713754 - 471 WP_003382605.1 MaoC family dehydratase -
PHA47_RS07750 (PHA47_07750) 1714150..1715838 + 1689 WP_017684330.1 long-chain-fatty-acid--CoA ligase FadD2 -
PHA47_RS07755 (PHA47_07755) 1716194..1717885 + 1692 WP_003382607.1 long-chain-fatty-acid--CoA ligase FadD1 -
PHA47_RS07760 (PHA47_07760) 1718012..1718302 - 291 WP_017684329.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PHA47_RS07765 (PHA47_07765) 1718292..1718537 - 246 WP_017684328.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
PHA47_RS07770 (PHA47_07770) 1718710..1722621 + 3912 WP_020365655.1 ATP-dependent RNA helicase HrpA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11019.86 Da        Isoelectric Point: 10.4180

>T268736 WP_017684329.1 NZ_CP116478:c1718302-1718012 [Pseudomonas syringae pv. actinidiae]
MTFKLEFLPSALKEWKKLGHTVSAQLKKKLLERLELPRNAGDALHGMPDHYKIKLRSAGYRLVYRVEDDRVVVTVVAVGK
RERGDIYDSAKDRLSP

Download         Length: 291 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8860.38 Da        Isoelectric Point: 4.9721

>AT268736 WP_017684328.1 NZ_CP116478:c1718537-1718292 [Pseudomonas syringae pv. actinidiae]
MQNIFADIAVSVSELKKNPSAVLSGAQGLPVAVLNHNKVMGYMVPAEVFEAMMKRLDDLDLADLIKARQHEKPVSVDILD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0K8M609

Antitoxin

Source ID Structure
AlphaFold DB A0A0K8M645

References