268715

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbDE/ParE-DnaT
Location 342321..342852 Replicon chromosome
Accession NZ_CP116477
Organism Pectobacterium sp. A5351

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag O1Q74_RS01615 Protein ID WP_271875811.1
Coordinates 342565..342852 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name stbD Uniprot ID -
Locus tag O1Q74_RS01610 Protein ID WP_180778477.1
Coordinates 342321..342575 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O1Q74_RS01585 (O1Q74_01585) 337436..338026 - 591 WP_005975525.1 DnaA initiator-associating protein DiaA -
O1Q74_RS01590 (O1Q74_01590) 338067..338423 - 357 WP_271878699.1 YraN family protein -
O1Q74_RS01595 (O1Q74_01595) 338420..340438 - 2019 WP_271875809.1 penicillin-binding protein activator -
O1Q74_RS01600 (O1Q74_01600) 340500..341387 + 888 WP_271875810.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
O1Q74_RS01610 (O1Q74_01610) 342321..342575 + 255 WP_180778477.1 plasmid stabilization protein Antitoxin
O1Q74_RS01615 (O1Q74_01615) 342565..342852 + 288 WP_271875811.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
O1Q74_RS01620 (O1Q74_01620) 343031..343816 + 786 WP_271875812.1 4,5-DOPA dioxygenase extradiol -
O1Q74_RS01625 (O1Q74_01625) 343886..345046 - 1161 WP_180778474.1 glutathionylspermidine synthase family protein -
O1Q74_RS01630 (O1Q74_01630) 345057..345731 - 675 WP_010297420.1 DUF1190 family protein -
O1Q74_RS01635 (O1Q74_01635) 345996..347390 - 1395 WP_271875813.1 outer membrane channel protein TolC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-82)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10992.92 Da        Isoelectric Point: 10.7694

>T268715 WP_271875811.1 NZ_CP116477:342565-342852 [Pectobacterium sp. A5351]
MTYKLKFVPSAMKEWKKLGHPVREQFKKKLAERLEHPRVPSAQLHGRKDQYKIKLKSAGYRLVYLVQDETITVMVMGVGK
REGSQVYSDTKGRSA

Download         Length: 288 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9240.44 Da        Isoelectric Point: 3.7947

>AT268715 WP_180778477.1 NZ_CP116477:342321-342575 [Pectobacterium sp. A5351]
MAFNILTNTAASITELKRDPMGTVRAAEGETIAILNRNEPAFYCVPPAMFAYLMELAEDAELGRTVDDRMSELADAEEIS
LDDL

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References