Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995398..1995669 | Replicon | chromosome |
| Accession | NZ_CP116405 | ||
| Organism | Escherichia coli strain HH107 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995528..1995631 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995398..1995669 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PL328_RS09585 | 1991953..1992615 | - | 663 | WP_180385241.1 | exodeoxyribonuclease X | - |
| PL328_RS09590 | 1992639..1993295 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PL328_RS09595 | 1993397..1993627 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PL328_RS09600 | 1993766..1994140 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| PL328_RS09605 | 1994144..1995016 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| PL328_RS09610 | 1995029..1995370 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1995398..1995669 | - | 272 | - | - | Antitoxin |
| - | 1995528..1995631 | + | 104 | - | - | Toxin |
| PL328_RS09615 | 1995766..1996422 | + | 657 | WP_057107450.1 | protein-serine/threonine phosphatase | - |
| PL328_RS09620 | 1996423..1996614 | - | 192 | WP_001313035.1 | YebW family protein | - |
| PL328_RS09625 | 1996719..1996955 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PL328_RS09630 | 1997073..1998512 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268649 NZ_CP116405:1995528-1995631 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT268649 NZ_CP116405:c1995669-1995398 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
