Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relB-yefM/YoeB-RelB |
Location | 376721..377237 | Replicon | chromosome |
Accession | NZ_CP116384 | ||
Organism | Vibrio sp. SCSIO 43137 |
Toxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | PK654_RS17480 | Protein ID | WP_271700320.1 |
Coordinates | 376968..377237 (+) | Length | 90 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | - |
Locus tag | PK654_RS17475 | Protein ID | WP_271700319.1 |
Coordinates | 376721..376975 (+) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PK654_RS17460 (PK654_17460) | 372790..374043 | + | 1254 | WP_271700316.1 | aromatic amino acid transport family protein | - |
PK654_RS17465 (PK654_17465) | 374138..375499 | + | 1362 | WP_271700317.1 | L-serine ammonia-lyase | - |
PK654_RS17470 (PK654_17470) | 375850..376629 | + | 780 | WP_271700318.1 | class I SAM-dependent methyltransferase | - |
PK654_RS17475 (PK654_17475) | 376721..376975 | + | 255 | WP_271700319.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
PK654_RS17480 (PK654_17480) | 376968..377237 | + | 270 | WP_271700320.1 | Txe/YoeB family addiction module toxin | Toxin |
PK654_RS17485 (PK654_17485) | 377455..378297 | + | 843 | WP_271700322.1 | ion transporter | - |
PK654_RS17490 (PK654_17490) | 378662..379684 | - | 1023 | WP_271700324.1 | tryptophan--tRNA ligase | - |
PK654_RS17495 (PK654_17495) | 380341..382098 | + | 1758 | WP_271700325.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | - | - | 374138..384728 | 10590 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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