Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 1274750..1275269 Replicon chromosome
Accession NZ_CP116383
Organism Vibrio sp. SCSIO 43137

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag PK654_RS05995 Protein ID WP_271698292.1
Coordinates 1274750..1275034 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag PK654_RS06000 Protein ID WP_271698818.1
Coordinates 1275027..1275269 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PK654_RS05985 (PK654_05985) 1272050..1272991 + 942 WP_271698290.1 sensor domain-containing diguanylate cyclase -
PK654_RS05990 (PK654_05990) 1273397..1274647 + 1251 WP_271698291.1 DEAD/DEAH box helicase -
PK654_RS05995 (PK654_05995) 1274750..1275034 - 285 WP_271698292.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PK654_RS06000 (PK654_06000) 1275027..1275269 - 243 WP_271698818.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
PK654_RS06005 (PK654_06005) 1275437..1277437 - 2001 WP_271698293.1 methyl-accepting chemotaxis protein -
PK654_RS06010 (PK654_06010) 1277773..1278306 + 534 WP_271698294.1 molybdopterin adenylyltransferase -
PK654_RS06015 (PK654_06015) 1278508..1279125 + 618 WP_271698295.1 DsbA family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-90)

Antitoxin

Antitoxin ParD

(1-64)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11228.90 Da        Isoelectric Point: 6.9771

>T268619 WP_271698292.1 NZ_CP116383:c1275034-1274750 [Vibrio sp. SCSIO 43137]
MYKLSQKAAEDFGNIYEYTFLNFGEDQADKYTDELESVLKTISEAPFIGRVCDDMKAGIRRHEHHKHSIFYRIRKVDIFI
VRILHQQMNPMLYL

Download         Length: 285 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8871.08 Da        Isoelectric Point: 9.9199

>AT268619 WP_271698818.1 NZ_CP116383:c1275269-1275027 [Vibrio sp. SCSIO 43137]
MRRTTSVTIGESLDGFVDRMVKSGRYGSTSEVMRSALRLLEQKENQLDLLRRAIDEGDASGESSLSLKEIAAQRKAKLNV

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References