Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3012626..3012778 | Replicon | chromosome |
| Accession | NZ_CP116347 | ||
| Organism | Enterobacter ludwigii strain CM-TZ4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3012640..3012743 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3012626..3012778 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA72_RS14705 (PHA72_14700) | 3008900..3010342 | + | 1443 | WP_059306271.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PHA72_RS14710 (PHA72_14705) | 3010448..3010687 | + | 240 | WP_020883412.1 | YebV family protein | - |
| PHA72_RS14715 (PHA72_14710) | 3010722..3011366 | - | 645 | WP_059306270.1 | protein-serine/threonine phosphatase | - |
| PHA72_RS14720 (PHA72_14715) | 3011534..3012475 | + | 942 | WP_059306269.1 | VirK/YbjX family protein | - |
| - | 3012626..3012778 | + | 153 | - | - | Antitoxin |
| - | 3012640..3012743 | - | 104 | - | - | Toxin |
| PHA72_RS14725 (PHA72_14720) | 3012882..3013220 | - | 339 | WP_059306268.1 | YebY family protein | - |
| PHA72_RS14730 (PHA72_14725) | 3013237..3014106 | - | 870 | WP_059306267.1 | copper homeostasis membrane protein CopD | - |
| PHA72_RS14735 (PHA72_14730) | 3014108..3014479 | - | 372 | Protein_2892 | CopC domain-containing protein YobA | - |
| PHA72_RS14740 (PHA72_14735) | 3014617..3014847 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| PHA72_RS14745 (PHA72_14740) | 3014957..3015607 | + | 651 | WP_020883406.1 | carbon-nitrogen hydrolase family protein | - |
| PHA72_RS14750 (PHA72_14745) | 3015632..3016294 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268607 NZ_CP116347:c3012743-3012640 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT268607 NZ_CP116347:3012626-3012778 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
