Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 547510..548075 Replicon chromosome
Accession NZ_CP116339
Organism Pseudoxanthomonas sp. JBR18

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PJ250_RS02660 Protein ID WP_271647017.1
Coordinates 547510..547830 (-) Length 107 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PJ250_RS02665 Protein ID WP_271647018.1
Coordinates 547818..548075 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PJ250_RS02645 (PJ250_02645) 542828..543541 + 714 WP_271647014.1 SDR family oxidoreductase -
PJ250_RS02650 (PJ250_02650) 544483..544905 - 423 WP_271647015.1 Dabb family protein -
PJ250_RS02655 (PJ250_02655) 545344..547272 - 1929 WP_271647016.1 alpha-L-fucosidase -
PJ250_RS02660 (PJ250_02660) 547510..547830 - 321 WP_271647017.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PJ250_RS02665 (PJ250_02665) 547818..548075 - 258 WP_271647018.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
PJ250_RS02670 (PJ250_02670) 548437..548910 - 474 WP_271648498.1 RNA polymerase sigma factor -
PJ250_RS02675 (PJ250_02675) 549120..549920 - 801 WP_271647019.1 hypothetical protein -
PJ250_RS02680 (PJ250_02680) 550283..550636 - 354 WP_271647020.1 hypothetical protein -
PJ250_RS02685 (PJ250_02685) 551133..551558 - 426 WP_271647021.1 hypothetical protein -
PJ250_RS02690 (PJ250_02690) 552321..552611 - 291 WP_271647022.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 540576..561386 20810


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-70)


Sequences

Toxin        


Download         Length: 107 a.a.        Molecular weight: 11952.78 Da        Isoelectric Point: 8.0706

>T268599 WP_271647017.1 NZ_CP116339:c547830-547510 [Pseudoxanthomonas sp. JBR18]
MAEIVWSEPALSDLDAIADYIALESPVAASELVKRIFGHVEQLADHPESGSRPPELGKSRYRQIVEPPCRVFYRYDGHKV
FVLHVMRSERLLRKGPLAARSKQVGI

Download         Length: 321 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9727.29 Da        Isoelectric Point: 9.7761

>AT268599 WP_271647018.1 NZ_CP116339:c548075-547818 [Pseudoxanthomonas sp. JBR18]
MRTELVTTLKRQATELLADIERDKEPILITQHGLPSAYLLDVETYQLMQQRMAILEGIARGEQALAEGRATTHAQARKRL
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References