Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ccdAB/CcdA(antitoxin)
Location 895899..896461 Replicon chromosome
Accession NZ_CP116304
Organism Pseudomonas sp. Q1-7

Toxin (Protein)


Gene name ccdB Uniprot ID -
Locus tag PJW05_RS04080 Protein ID WP_271410468.1
Coordinates 896144..896461 (+) Length 106 a.a.

Antitoxin (Protein)


Gene name ccdA Uniprot ID -
Locus tag PJW05_RS04075 Protein ID WP_271410467.1
Coordinates 895899..896144 (+) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PJW05_RS04055 891996..893201 + 1206 WP_271410463.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE -
PJW05_RS04060 893294..894391 + 1098 WP_271410464.1 cobalt-precorrin-5B (C(1))-methyltransferase -
PJW05_RS04065 894388..895119 + 732 WP_271410465.1 cobalt-precorrin-6A reductase -
PJW05_RS04070 895116..895823 + 708 WP_271410466.1 (2Fe-2S) ferredoxin domain-containing protein -
PJW05_RS04075 895899..896144 + 246 WP_271410467.1 type II toxin-antitoxin system CcdA family antitoxin Antitoxin
PJW05_RS04080 896144..896461 + 318 WP_271410468.1 CcdB family protein Toxin
PJW05_RS04085 896458..897228 - 771 WP_271410469.1 VWA domain-containing protein -
PJW05_RS04090 897153..898154 - 1002 WP_271410470.1 AAA family ATPase -
PJW05_RS04095 898671..899756 + 1086 WP_271410471.1 3-deoxy-7-phosphoheptulonate synthase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin CcdB

(3-104)

Antitoxin

Post-segregation antitoxin CcdA

(11-81)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 11327.35 Da        Isoelectric Point: 4.6684

>T268579 WP_271410468.1 NZ_CP116304:896144-896461 [Pseudomonas sp. Q1-7]
MPQFAVHLNANPATRTTIPYLLDIQSDLIADLGSRVVVPLYTVDVMKGRVLKTLMPLFEVEGNTVVMVTPELAGVSRKAL
GEQVADLSALRNEIIAALDLLITGI

Download         Length: 318 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9208.46 Da        Isoelectric Point: 6.4621

>AT268579 WP_271410467.1 NZ_CP116304:895899-896144 [Pseudomonas sp. Q1-7]
MPAIYDQHAPKKPANLSINSDLLNKARSLDINLSATLEQALVEALRARQRELWLEENRAAMAAYNQHIEMDGVFSDGLRR
F

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References