Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 765593..766204 Replicon chromosome
Accession NZ_CP116297
Organism Tenacibaculum finnmarkense strain LI C6 FM3-F

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag PJJ26_RS04075 Protein ID WP_232122568.1
Coordinates 765881..766204 (-) Length 108 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PJJ26_RS04070 Protein ID WP_101955994.1
Coordinates 765593..765877 (-) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PJJ26_RS04050 (PJJ26_04050) 762078..762797 - 720 WP_101915816.1 gliding motility-associated ABC transporter permease subunit GldF -
PJJ26_RS04055 (PJJ26_04055) 762797..763330 - 534 WP_101955995.1 GNAT family N-acetyltransferase -
PJJ26_RS04060 (PJJ26_04060) 763405..764268 - 864 WP_101915814.1 SAM-dependent chlorinase/fluorinase -
PJJ26_RS04065 (PJJ26_04065) 764403..765356 + 954 WP_271412921.1 PhoH family protein -
PJJ26_RS04070 (PJJ26_04070) 765593..765877 - 285 WP_101955994.1 putative addiction module antidote protein Antitoxin
PJJ26_RS04075 (PJJ26_04075) 765881..766204 - 324 WP_232122568.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PJJ26_RS04080 (PJJ26_04080) 766344..767816 + 1473 WP_271412922.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
PJJ26_RS04085 (PJJ26_04085) 767946..768893 + 948 WP_271412923.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
PJJ26_RS04090 (PJJ26_04090) 768886..769278 + 393 WP_101915811.1 glyoxalase -
PJJ26_RS04095 (PJJ26_04095) 769306..770494 + 1189 Protein_648 trans-2-enoyl-CoA reductase family protein -
PJJ26_RS04100 (PJJ26_04100) 770581..771051 + 471 WP_271412924.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(20-101)

Antitoxin

Uncharacterized protein HI1420

(3-89)


Sequences

Toxin        


Download         Length: 108 a.a.        Molecular weight: 12733.03 Da        Isoelectric Point: 10.4272

>T268574 WP_232122568.1 NZ_CP116297:c766204-765881 [Tenacibaculum finnmarkense]
MYPSRYSIMFFIEKTTEFDKWLKKLKDFKAKAKILFRIQKLESDEHFGDCKTVGDGIREMRINFAKGYRIYFKEKDGKVI
VLLIGGDKSTQQKDITKAKEIWKKLNK

Download         Length: 324 bp

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10075.55 Da        Isoelectric Point: 4.5510

>AT268574 WP_101955994.1 NZ_CP116297:c765877-765593 [Tenacibaculum finnmarkense]
METSRFEIADYLESKEMIAEYLNTVLEEGNNADVINAIGNIAKAIGMTKIAEETGLSRPSLYKALSDGAKPQFATIMKVL
KAIGGQIQVNPASA

Download         Length: 285 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References