Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 765593..766204 Replicon chromosome
Accession NZ_CP116297
Organism Tenacibaculum finnmarkense strain LI C6 FM3-F

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag PJJ26_RS04075 Protein ID WP_232122568.1
Coordinates 765881..766204 (-) Length 108 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PJJ26_RS04070 Protein ID WP_101955994.1
Coordinates 765593..765877 (-) Length 95 a.a.

Genomic Context

PJJ26_RS04065PJJ26_RS04080PJJ26_RS04085PJJ26_RS04090PJJ26_RS04095PJJ26_RS04100PJJ26_RS04050PJJ26_RS04055PJJ26_RS04060PJJ26_RS04070PJJ26_RS04075
Location: 764403..765356 (954 bp)
Type: Others
Protein ID: WP_271412921.1
Location: 766344..767816 (1473 bp)
Type: Others
Protein ID: WP_271412922.1
Location: 767946..768893 (948 bp)
Type: Others
Protein ID: WP_271412923.1
Location: 768886..769278 (393 bp)
Type: Others
Protein ID: WP_101915811.1
Location: 769306..770494 (1189 bp)
Type: Others
Protein ID: Protein_648
Location: 770581..771051 (471 bp)
Type: Others
Protein ID: WP_271412924.1
Location: 762078..762797 (720 bp)
Type: Others
Protein ID: WP_101915816.1
Location: 762797..763330 (534 bp)
Type: Others
Protein ID: WP_101955995.1
Location: 763405..764268 (864 bp)
Type: Others
Protein ID: WP_101915814.1
Location: 765593..765877 (285 bp)
Type: Antitoxin
Protein ID: WP_101955994.1
Location: 765881..766204 (324 bp)
Type: Toxin
Protein ID: WP_232122568.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PJJ26_RS04050 (PJJ26_04050)762078..762797-720WP_101915816.1gliding motility-associated ABC transporter permease subunit GldF-
PJJ26_RS04055 (PJJ26_04055)762797..763330-534WP_101955995.1GNAT family N-acetyltransferase-
PJJ26_RS04060 (PJJ26_04060)763405..764268-864WP_101915814.1SAM-dependent chlorinase/fluorinase-
PJJ26_RS04065 (PJJ26_04065)764403..765356+954WP_271412921.1PhoH family protein-
PJJ26_RS04070 (PJJ26_04070)765593..765877-285WP_101955994.1putative addiction module antidote proteinAntitoxin
PJJ26_RS04075 (PJJ26_04075)765881..766204-324WP_232122568.1type II toxin-antitoxin system RelE/ParE family toxinToxin
PJJ26_RS04080 (PJJ26_04080)766344..767816+1473WP_271412922.1bifunctional UDP-sugar hydrolase/5'-nucleotidase-
PJJ26_RS04085 (PJJ26_04085)767946..768893+948WP_271412923.1phosphoribosylaminoimidazolesuccinocarboxamide synthase-
PJJ26_RS04090 (PJJ26_04090)768886..769278+393WP_101915811.1glyoxalase-
PJJ26_RS04095 (PJJ26_04095)769306..770494+1189Protein_648trans-2-enoyl-CoA reductase family protein-
PJJ26_RS04100 (PJJ26_04100)770581..771051+471WP_271412924.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(20-101)

Antitoxin

Uncharacterized protein HI1420

(3-89)


Sequences

Toxin        


Download         Length: 108 a.a.        Molecular weight: 12733.03 Da        Isoelectric Point: 10.4272

>T268574 WP_232122568.1 NZ_CP116297:c766204-765881 [Tenacibaculum finnmarkense]
MYPSRYSIMFFIEKTTEFDKWLKKLKDFKAKAKILFRIQKLESDEHFGDCKTVGDGIREMRINFAKGYRIYFKEKDGKVI
VLLIGGDKSTQQKDITKAKEIWKKLNK

Download         Length: 324 bp

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10075.55 Da        Isoelectric Point: 4.5510

>AT268574 WP_101955994.1 NZ_CP116297:c765877-765593 [Tenacibaculum finnmarkense]
METSRFEIADYLESKEMIAEYLNTVLEEGNNADVINAIGNIAKAIGMTKIAEETGLSRPSLYKALSDGAKPQFATIMKVL
KAIGGQIQVNPASA

Download         Length: 285 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References