Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1980314..1980459 | Replicon | chromosome |
| Accession | NZ_CP116249 | ||
| Organism | Enterobacter roggenkampii strain 120063 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1980349..1980452 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1980314..1980459 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KK030_RS09925 (KK030_09915) | 1976797..1977459 | - | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
| KK030_RS09930 (KK030_09920) | 1977484..1978134 | - | 651 | WP_214574198.1 | carbon-nitrogen hydrolase family protein | - |
| KK030_RS09935 (KK030_09925) | 1978245..1978475 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| KK030_RS09940 (KK030_09930) | 1978613..1978984 | + | 372 | WP_126325542.1 | CopC domain-containing protein YobA | - |
| KK030_RS09945 (KK030_09935) | 1978986..1979855 | + | 870 | WP_214574196.1 | copper homeostasis membrane protein CopD | - |
| KK030_RS09950 (KK030_09940) | 1979872..1980210 | + | 339 | WP_008500468.1 | YebY family protein | - |
| - | 1980314..1980459 | - | 146 | - | - | Antitoxin |
| - | 1980349..1980452 | + | 104 | - | - | Toxin |
| KK030_RS09955 (KK030_09945) | 1980908..1981888 | + | 981 | WP_039025567.1 | IS5-like element ISKpn26 family transposase | - |
| KK030_RS09960 | 1981946..1982209 | + | 264 | WP_271800353.1 | hypothetical protein | - |
| KK030_RS09965 (KK030_09950) | 1982516..1983457 | - | 942 | WP_021240429.1 | VirK/YbjX family protein | - |
| KK030_RS09970 (KK030_09955) | 1983624..1984268 | + | 645 | WP_126325541.1 | protein-serine/threonine phosphatase | - |
| KK030_RS09975 (KK030_09960) | 1984303..1984542 | - | 240 | WP_008500472.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1980908..1981888 | 980 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268554 NZ_CP116249:1980349-1980452 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT268554 NZ_CP116249:c1980459-1980314 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
