Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2162957..2163125 | Replicon | chromosome |
| Accession | NZ_CP116214 | ||
| Organism | Klebsiella michiganensis strain 2563 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2163015..2163118 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2162957..2163125 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA56_RS10280 (PHA56_10285) | 2158084..2160144 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| PHA56_RS10285 (PHA56_10290) | 2160151..2160810 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| PHA56_RS10290 (PHA56_10295) | 2160889..2161119 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| PHA56_RS10295 (PHA56_10300) | 2161255..2161629 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| PHA56_RS10300 (PHA56_10305) | 2161634..2162503 | + | 870 | WP_038424672.1 | copper homeostasis membrane protein CopD | - |
| PHA56_RS10305 (PHA56_10310) | 2162520..2162858 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2162957..2163125 | - | 169 | - | - | Antitoxin |
| - | 2163015..2163118 | + | 104 | - | - | Toxin |
| PHA56_RS10310 (PHA56_10315) | 2163243..2164202 | - | 960 | WP_025106131.1 | spore coat protein U domain-containing protein | - |
| PHA56_RS10315 (PHA56_10320) | 2164217..2166547 | - | 2331 | WP_076752314.1 | fimbria/pilus outer membrane usher protein | - |
| PHA56_RS10320 (PHA56_10325) | 2166550..2167314 | - | 765 | WP_042945473.1 | fimbria/pilus periplasmic chaperone | - |
| PHA56_RS10325 (PHA56_10330) | 2167333..2167851 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268454 NZ_CP116214:2163015-2163118 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT268454 NZ_CP116214:c2163125-2162957 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
