Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2607567..2607835 | Replicon | chromosome |
| Accession | NZ_CP116194 | ||
| Organism | Escherichia coli strain DETEC-E1005 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2607605..2607707 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2607567..2607835 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB63_RS12930 | 2604723..2606162 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PIB63_RS12935 | 2606281..2606517 | + | 237 | WP_001295499.1 | YebV family protein | - |
| PIB63_RS12940 | 2606622..2606813 | + | 192 | WP_024186842.1 | YebW family protein | - |
| PIB63_RS12945 | 2606814..2607470 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 2607567..2607835 | + | 269 | - | - | Antitoxin |
| - | 2607605..2607707 | - | 103 | - | - | Toxin |
| PIB63_RS12950 | 2607865..2608206 | - | 342 | WP_000984819.1 | YebY family protein | - |
| PIB63_RS12955 | 2608219..2609091 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| PIB63_RS12960 | 2609095..2609469 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PIB63_RS12965 | 2609608..2609838 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIB63_RS12970 | 2609940..2610596 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIB63_RS12975 | 2610620..2611282 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T268399 NZ_CP116194:c2607707-2607605 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT268399 NZ_CP116194:2607567-2607835 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
