Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2124036..2124304 | Replicon | chromosome |
| Accession | NZ_CP116181 | ||
| Organism | Escherichia coli strain DETEC-E480 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2124164..2124266 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2124036..2124304 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB86_RS10140 | 2120589..2121251 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PIB86_RS10145 | 2121275..2121931 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIB86_RS10150 | 2122033..2122263 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIB86_RS10155 | 2122402..2122776 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PIB86_RS10160 | 2122780..2123652 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| PIB86_RS10165 | 2123665..2124006 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2124036..2124304 | - | 269 | - | - | Antitoxin |
| - | 2124164..2124266 | + | 103 | - | - | Toxin |
| PIB86_RS10170 | 2124401..2125057 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| PIB86_RS10175 | 2125058..2125249 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PIB86_RS10180 | 2125354..2125590 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PIB86_RS10185 | 2125707..2127146 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T268310 NZ_CP116181:2124164-2124266 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT268310 NZ_CP116181:c2124304-2124036 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
