Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1999529..1999800 | Replicon | chromosome |
| Accession | NZ_CP116169 | ||
| Organism | Escherichia coli strain DETEC-P1056 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1999659..1999762 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1999529..1999800 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC86_RS09710 | 1996084..1996746 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PIC86_RS09715 | 1996770..1997426 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIC86_RS09720 | 1997528..1997758 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIC86_RS09725 | 1997897..1998271 | + | 375 | WP_098737268.1 | CopC domain-containing protein YobA | - |
| PIC86_RS09730 | 1998275..1999147 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| PIC86_RS09735 | 1999160..1999501 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1999529..1999800 | - | 272 | - | - | Antitoxin |
| - | 1999659..1999762 | + | 104 | - | - | Toxin |
| PIC86_RS09740 | 1999897..2000553 | + | 657 | WP_069896249.1 | protein-serine/threonine phosphatase | - |
| PIC86_RS09745 | 2000554..2000745 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PIC86_RS09750 | 2000850..2001086 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PIC86_RS09755 | 2001204..2002643 | - | 1440 | WP_098737273.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268265 NZ_CP116169:1999659-1999762 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT268265 NZ_CP116169:c1999800-1999529 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
