Detailed information of TA system TA026821

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): Rv0298-Rv0299/-
• Location: 359115..359641
• Replicon: chromosome
• Accession: NC_017522
• Organism: Mycobacterium tuberculosis CCDC5180

Toxin (Protein)

• Gene name: Rv0299
• Uniprot ID: -
• Locus tag: CCDC5180_RS01575
• Protein ID: WP_003401560.1
• Coordinates: 359339..359641 (+)
• Length: 101 a.a.

Antitoxin (Protein)

• Gene name: Rv0298
• Uniprot ID: P9WJ08
• Locus tag: CCDC5180_RS01570
• Protein ID: WP_003401555.1
• Coordinates: 359115..359342 (+)
• Length: 76 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CCDC5180_RS01555	354808..355611	-	804	WP_003401540.1	hypothetical protein	-
CCDC5180_RS01560	355621..357018	-	1398	WP_003401544.1	sulfatase	-
CCDC5180_RS01565	357197..358972	+	1776	WP_010886074.1	PE family protein	-
CCDC5180_RS01570	359115..359342	+	228	WP_003401555.1	ribbon-helix-helix protein, CopG family	Antitoxin
CCDC5180_RS01575	359339..359641	+	303	WP_003401560.1	toxin-antitoxin system toxin	Toxin
CCDC5180_RS01580	359689..359910	+	222	WP_003401563.1	type II toxin-antitoxin system antitoxin VapB2	-
CCDC5180_RS01585	359907..360332	+	426	WP_003401566.1	PIN domain nuclease	-
CCDC5180_RS01590	360468..361100	+	633	WP_003905275.1	TetR/AcrR family transcriptional regulator	-
CCDC5180_RS01595	361097..362005	+	909	WP_003900117.1	SDR family NAD(P)-dependent oxidoreductase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Ribbon-helix-helix protein, CopG (6-41)

Sequences

Toxin

Protein

• Length: 101 a.a.
• Molecular weight: 10442.16 Da
• Isoelectric Point: 4.9609

>T26821 WP_003401560.1 NC_017522:359339-359641 [Mycobacterium tuberculosis CCDC5180]
MIAPGDIAPRRDSEHELYVAVLSNALHRAADTGRVITCPFIPGRVPEDLLAMVVAVEQPNGTLLPELVQWLHVAALGAPL
GNAGVAALREAASVVTALLC

Nucleotide

• Length: 303 bp

>T26821 NC_017522:359339-359641 [Mycobacterium tuberculosis CCDC5180]
TTGATCGCTCCCGGCGACATCGCGCCGCGCCGCGACAGTGAACACGAGCTCTACGTCGCCGTCTTGTCCAACGCGCTCCA
TCGGGCCGCGGACACCGGACGGGTGATCACCTGCCCATTCATTCCGGGCCGGGTCCCCGAGGATCTCTTGGCGATGGTGG
TGGCGGTCGAGCAACCCAACGGCACGCTGCTGCCGGAACTCGTGCAGTGGCTTCATGTTGCCGCGCTCGGTGCGCCACTC
GGCAACGCGGGCGTGGCCGCCCTACGCGAGGCTGCCTCGGTCGTGACAGCTCTGCTCTGTTAG

Antitoxin

Protein

• Length: 76 a.a.
• Molecular weight: 8130.21 Da
• Isoelectric Point: 7.0084

>AT26821 WP_003401555.1 NC_017522:359115-359342 [Mycobacterium tuberculosis CCDC5180]
MTKEKISVTVDAAVLAAIDADARAAGLNRSEMIEQALRNEHLRVALRDYTAKTVPALDIDAYAQRVYQANRAAGS

Nucleotide

• Length: 228 bp

>AT26821 NC_017522:359115-359342 [Mycobacterium tuberculosis CCDC5180]
ATGACGAAAGAGAAGATCTCCGTGACGGTGGACGCGGCCGTCCTCGCGGCGATCGACGCGGACGCCAGGGCGGCGGGTTT
GAATCGGTCGGAAATGATTGAGCAGGCACTGCGCAACGAGCACCTGCGTGTCGCTCTGCGCGATTACACGGCTAAAACCG
TACCGGCGTTGGACATCGATGCCTACGCACAGCGGGTGTACCAGGCGAACCGAGCGGCCGGAAGTTGA

Structures

Antitoxin

• AlphaFold DB: A0A7U4F8T1