Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1965701..1965972 | Replicon | chromosome |
| Accession | NZ_CP116152 | ||
| Organism | Escherichia coli strain DETEC-P61 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1965831..1965934 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1965701..1965972 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC71_RS09680 | 1962256..1962918 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| PIC71_RS09685 | 1962942..1963598 | - | 657 | WP_063121046.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIC71_RS09690 | 1963700..1963930 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIC71_RS09695 | 1964069..1964443 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PIC71_RS09700 | 1964447..1965319 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| PIC71_RS09705 | 1965332..1965673 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1965701..1965972 | - | 272 | - | - | Antitoxin |
| - | 1965831..1965934 | + | 104 | - | - | Toxin |
| PIC71_RS09710 | 1966069..1966725 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| PIC71_RS09715 | 1966726..1966917 | - | 192 | WP_001338167.1 | YebW family protein | - |
| PIC71_RS09720 | 1967022..1967258 | - | 237 | WP_001338166.1 | YebV family protein | - |
| PIC71_RS09725 | 1967376..1968815 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268183 NZ_CP116152:1965831-1965934 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT268183 NZ_CP116152:c1965972-1965701 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
