Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2202671..2202942 | Replicon | chromosome |
| Accession | NZ_CP116136 | ||
| Organism | Escherichia coli strain DETEC-P649 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2202801..2202904 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2202671..2202942 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB66_RS10460 | 2199226..2199888 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PIB66_RS10465 | 2199912..2200568 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIB66_RS10470 | 2200670..2200900 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIB66_RS10475 | 2201039..2201413 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PIB66_RS10480 | 2201417..2202289 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| PIB66_RS10485 | 2202302..2202643 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2202671..2202942 | - | 272 | - | - | Antitoxin |
| - | 2202801..2202904 | + | 104 | - | - | Toxin |
| PIB66_RS10490 | 2203039..2203695 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| PIB66_RS10495 | 2203696..2203887 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PIB66_RS10500 | 2203992..2204228 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PIB66_RS10505 | 2204346..2205785 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2195361..2205791 | 10430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268125 NZ_CP116136:2202801-2202904 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT268125 NZ_CP116136:c2202942-2202671 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
