Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2628987..2629255 Replicon chromosome
Accession NZ_CP116115
Organism Escherichia coli strain DETEC-P793

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2629025..2629127 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2628987..2629255 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PIC92_RS13065 2626143..2627582 + 1440 WP_024186841.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
PIC92_RS13070 2627701..2627937 + 237 WP_001295499.1 YebV family protein -
PIC92_RS13075 2628042..2628233 + 192 WP_024186842.1 YebW family protein -
PIC92_RS13080 2628234..2628890 - 657 WP_000812744.1 protein-serine/threonine phosphatase -
- 2628987..2629255 + 269 - - Antitoxin
- 2629025..2629127 - 103 - - Toxin
PIC92_RS13085 2629285..2629626 - 342 WP_000984819.1 YebY family protein -
PIC92_RS13090 2629639..2630511 - 873 WP_000879311.1 copper homeostasis membrane protein CopD -
PIC92_RS13095 2630515..2630889 - 375 WP_000168747.1 CopC domain-containing protein YobA -
PIC92_RS13100 2631028..2631258 + 231 WP_000916763.1 DNA polymerase III subunit theta -
PIC92_RS13105 2631360..2632016 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein YobB -
PIC92_RS13110 2632040..2632702 + 663 WP_000944258.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T268065 NZ_CP116115:c2629127-2629025 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT268065 NZ_CP116115:2628987-2629255 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References