Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2105317..2105588 Replicon chromosome
Accession NZ_CP116106
Organism Escherichia coli strain DETEC-P829

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2105447..2105550 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2105317..2105588 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PIC05_RS10185 2101872..2102534 - 663 WP_000944256.1 exodeoxyribonuclease X -
PIC05_RS10190 2102558..2103214 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein YobB -
PIC05_RS10195 2103316..2103546 - 231 WP_000916763.1 DNA polymerase III subunit theta -
PIC05_RS10200 2103685..2104059 + 375 WP_000204699.1 CopC domain-containing protein YobA -
PIC05_RS10205 2104063..2104935 + 873 WP_000879280.1 copper homeostasis membrane protein CopD -
PIC05_RS10210 2104948..2105289 + 342 WP_000976472.1 YebY family protein -
- 2105317..2105588 - 272 - - Antitoxin
- 2105447..2105550 + 104 - - Toxin
PIC05_RS10215 2105685..2106341 + 657 WP_000812710.1 protein-serine/threonine phosphatase -
PIC05_RS10220 2106342..2106533 - 192 WP_001296140.1 YebW family protein -
PIC05_RS10225 2106638..2106874 - 237 WP_001295499.1 YebV family protein -
PIC05_RS10230 2106992..2108431 - 1440 WP_000057022.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T267990 NZ_CP116106:2105447-2105550 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT267990 NZ_CP116106:c2105588-2105317 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References