Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 334979..335247 | Replicon | chromosome |
| Accession | NZ_CP116100 | ||
| Organism | Escherichia coli strain DETEC-P881 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 335107..335209 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 334979..335247 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC52_RS01575 | 331533..332195 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| PIC52_RS01580 | 332219..332875 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIC52_RS01585 | 332977..333207 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIC52_RS01590 | 333346..333720 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| PIC52_RS01595 | 333724..334596 | + | 873 | WP_001607483.1 | copper homeostasis membrane protein CopD | - |
| PIC52_RS01600 | 334608..334949 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 334979..335247 | - | 269 | - | - | Antitoxin |
| - | 335107..335209 | + | 103 | - | - | Toxin |
| PIC52_RS01605 | 335344..336000 | + | 657 | WP_001607480.1 | protein-serine/threonine phosphatase | - |
| PIC52_RS01610 | 336001..336192 | - | 192 | WP_001317886.1 | YebW family protein | - |
| PIC52_RS01615 | 336297..336533 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PIC52_RS01620 | 336651..338090 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T267929 NZ_CP116100:335107-335209 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT267929 NZ_CP116100:c335247-334979 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
