Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2605246..2605517 | Replicon | chromosome |
| Accession | NZ_CP116094 | ||
| Organism | Escherichia coli strain DETEC-S560 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2605284..2605387 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2605246..2605517 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC78_RS12725 | 2602403..2603842 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PIC78_RS12730 | 2603960..2604196 | + | 237 | WP_001295499.1 | YebV family protein | - |
| PIC78_RS12735 | 2604301..2604492 | + | 192 | WP_000457842.1 | YebW family protein | - |
| PIC78_RS12740 | 2604493..2605149 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2605246..2605517 | + | 272 | - | - | Antitoxin |
| - | 2605284..2605387 | - | 104 | - | - | Toxin |
| PIC78_RS12745 | 2605545..2605886 | - | 342 | WP_000976476.1 | YebY family protein | - |
| PIC78_RS12750 | 2605899..2606771 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| PIC78_RS12755 | 2606775..2607149 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PIC78_RS12760 | 2607288..2607518 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIC78_RS12765 | 2607620..2608276 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIC78_RS12770 | 2608300..2608962 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T267903 NZ_CP116094:c2605387-2605284 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT267903 NZ_CP116094:2605246-2605517 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
