Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 345120..345391 | Replicon | chromosome |
| Accession | NZ_CP116088 | ||
| Organism | Escherichia coli strain DETEC-S565 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 345250..345353 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 345120..345391 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC22_RS01830 | 341675..342337 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PIC22_RS01835 | 342361..343017 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIC22_RS01840 | 343119..343349 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIC22_RS01845 | 343488..343862 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PIC22_RS01850 | 343866..344738 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| PIC22_RS01855 | 344751..345092 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 345120..345391 | - | 272 | - | - | Antitoxin |
| - | 345250..345353 | + | 104 | - | - | Toxin |
| PIC22_RS01860 | 345488..346144 | + | 657 | Protein_363 | protein-serine/threonine phosphatase | - |
| PIC22_RS01865 | 346145..346336 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PIC22_RS01870 | 346441..346677 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PIC22_RS01875 | 346795..348234 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T267866 NZ_CP116088:345250-345353 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT267866 NZ_CP116088:c345391-345120 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
