Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2144588..2144859 | Replicon | chromosome |
| Accession | NZ_CP116074 | ||
| Organism | Escherichia coli strain DETEC-S586 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2144718..2144821 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2144588..2144859 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC49_RS10160 | 2141143..2141805 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PIC49_RS10165 | 2141829..2142485 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIC49_RS10170 | 2142587..2142817 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIC49_RS10175 | 2142956..2143330 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| PIC49_RS10180 | 2143334..2144206 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| PIC49_RS10185 | 2144219..2144560 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2144588..2144859 | - | 272 | - | - | Antitoxin |
| - | 2144718..2144821 | + | 104 | - | - | Toxin |
| PIC49_RS10190 | 2144956..2145612 | + | 657 | WP_001546849.1 | protein-serine/threonine phosphatase | - |
| PIC49_RS10195 | 2145613..2145804 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PIC49_RS10200 | 2145909..2146145 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PIC49_RS10205 | 2146263..2147702 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2137278..2161409 | 24131 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T267817 NZ_CP116074:2144718-2144821 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT267817 NZ_CP116074:c2144859-2144588 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
