Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1144073..1144344 | Replicon | chromosome |
| Accession | NZ_CP116067 | ||
| Organism | Escherichia coli strain DETEC-S792 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1144111..1144213 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1144073..1144344 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PID00_RS05955 | 1141230..1142669 | + | 1440 | WP_096122183.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PID00_RS05960 | 1142787..1143023 | + | 237 | WP_001295499.1 | YebV family protein | - |
| PID00_RS05965 | 1143128..1143319 | + | 192 | WP_001296140.1 | YebW family protein | - |
| PID00_RS05970 | 1143320..1143976 | - | 657 | WP_096122178.1 | protein-serine/threonine phosphatase | - |
| - | 1144073..1144344 | + | 272 | - | - | Antitoxin |
| - | 1144111..1144213 | - | 103 | - | - | Toxin |
| PID00_RS05975 | 1144372..1144713 | - | 342 | WP_000976472.1 | YebY family protein | - |
| PID00_RS05980 | 1144726..1145598 | - | 873 | WP_000879327.1 | copper homeostasis membrane protein CopD | - |
| PID00_RS05985 | 1145602..1145976 | - | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| PID00_RS05990 | 1146115..1146345 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PID00_RS05995 | 1146446..1147102 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PID00_RS06000 | 1147126..1147788 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T267752 NZ_CP116067:c1144213-1144111 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT267752 NZ_CP116067:1144073-1144344 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
