Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2148489..2148757 | Replicon | chromosome |
| Accession | NZ_CP116035 | ||
| Organism | Escherichia coli strain FAH | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2148617..2148719 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2148489..2148757 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PGH49_RS10305 | 2145042..2145704 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| PGH49_RS10310 | 2145728..2146384 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PGH49_RS10315 | 2146486..2146716 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PGH49_RS10320 | 2146855..2147229 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PGH49_RS10325 | 2147233..2148105 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| PGH49_RS10330 | 2148118..2148459 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2148489..2148757 | - | 269 | - | - | Antitoxin |
| - | 2148617..2148719 | + | 103 | - | - | Toxin |
| PGH49_RS10335 | 2148854..2149510 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| PGH49_RS10340 | 2149511..2149702 | - | 192 | WP_024186842.1 | YebW family protein | - |
| PGH49_RS10345 | 2149807..2150043 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PGH49_RS10350 | 2150162..2151601 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T267647 NZ_CP116035:2148617-2148719 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT267647 NZ_CP116035:c2148757-2148489 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
