Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1735992..1736102 | Replicon | chromosome |
| Accession | NZ_CP116003 | ||
| Organism | Edwardsiella piscicida strain CC1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1735999..1736100 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1735992..1736102 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| - | 1735992..1736102 | - | 111 | - | - | Antitoxin |
| - | 1735999..1736100 | + | 102 | - | - | Toxin |
| PED68_RS07985 (PED68_07985) | 1736354..1736668 | - | 315 | WP_280978108.1 | hypothetical protein | - |
| PED68_RS07990 (PED68_07990) | 1737117..1737674 | + | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| PED68_RS07995 (PED68_07995) | 1737762..1738121 | + | 360 | WP_012848484.1 | YcgJ family protein | - |
| PED68_RS08000 (PED68_08000) | 1738363..1738953 | - | 591 | WP_071818517.1 | hypothetical protein | - |
| PED68_RS08005 (PED68_08005) | 1739026..1739499 | - | 474 | WP_012848486.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| PED68_RS08010 (PED68_08010) | 1739510..1739788 | - | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| PED68_RS08015 (PED68_08015) | 1739846..1740469 | - | 624 | WP_012848489.1 | response regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1676651..1738121 | 61470 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T267592 NZ_CP116003:1735999-1736100 [Edwardsiella piscicida]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT267592 NZ_CP116003:c1736102-1735992 [Edwardsiella piscicida]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
