Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 1432239..1432783 Replicon chromosome
Accession NZ_CP115946
Organism Ralstonia solanacearum MolK2

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PG909_RS06495 Protein ID WP_003276775.1
Coordinates 1432508..1432783 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PG909_RS06490 Protein ID WP_003276774.1
Coordinates 1432239..1432508 (+) Length 90 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PG909_RS06465 1428811..1429689 - 879 WP_003276768.1 EamA family transporter -
PG909_RS06470 1430077..1430214 + 138 WP_230680075.1 hypothetical protein -
PG909_RS06475 1430348..1430731 + 384 WP_003276772.1 hypothetical protein -
PG909_RS06480 1430765..1431661 - 897 WP_042589407.1 LysR substrate-binding domain-containing protein -
PG909_RS06485 1431794..1431946 + 153 WP_230680172.1 hypothetical protein -
PG909_RS06490 1432239..1432508 + 270 WP_003276774.1 ribbon-helix-helix domain-containing protein Antitoxin
PG909_RS06495 1432508..1432783 + 276 WP_003276775.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PG909_RS06500 1432897..1433760 - 864 WP_155402169.1 spermidine synthase -
PG909_RS06505 1434050..1434985 + 936 WP_064298732.1 5-dehydro-4-deoxyglucarate dehydratase -
PG909_RS06510 1435017..1436603 + 1587 WP_003276780.1 aldehyde dehydrogenase (NADP(+)) -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(9-45)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10690.42 Da        Isoelectric Point: 9.8951

>T267527 WP_003276775.1 NZ_CP115946:1432508-1432783 [Ralstonia solanacearum MolK2]
MELKWTSKALSDVARLYEFLAPVNKPAAARAVQALIKASTILLTNPRVGEQLFQFEPREVRRILVGQYEMRYALQDETIY
VLRLWHTREDR

Download         Length: 276 bp

Antitoxin


Download         Length: 90 a.a.        Molecular weight: 10066.38 Da        Isoelectric Point: 4.8616

>AT267527 WP_003276774.1 NZ_CP115946:1432239-1432508 [Ralstonia solanacearum MolK2]
MPKAETRVLTAHVPVPLAEKVDQLAERLERSRGWIMKQALSAWIGQEEERDRLTHEALADMDAGRVIDHQAVQAWADSLS
TDEPLQVPR

Download         Length: 270 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References