Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1910636..1910781 | Replicon | chromosome |
| Accession | NZ_CP115930 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain 43UC01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1910672..1910774 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1910636..1910781 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLD89_RS09350 (DLD89_09350) | 1905766..1907826 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| DLD89_RS09355 (DLD89_09355) | 1907830..1908489 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DLD89_RS09360 (DLD89_09360) | 1908568..1908798 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DLD89_RS09365 (DLD89_09365) | 1908911..1909285 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DLD89_RS09370 (DLD89_09370) | 1909289..1910158 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| DLD89_RS09375 (DLD89_09375) | 1910175..1910513 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1910636..1910781 | - | 146 | - | - | Antitoxin |
| - | 1910672..1910774 | + | 103 | - | - | Toxin |
| DLD89_RS09380 (DLD89_09380) | 1911149..1911292 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DLD89_RS09385 (DLD89_09385) | 1911397..1912365 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DLD89_RS09390 (DLD89_09390) | 1912522..1913175 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| DLD89_RS09395 (DLD89_09395) | 1913172..1913363 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DLD89_RS09400 (DLD89_09400) | 1913461..1913700 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DLD89_RS09405 (DLD89_09405) | 1913816..1915249 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T267501 NZ_CP115930:1910672-1910774 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT267501 NZ_CP115930:c1910781-1910636 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
