Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) rlegTA/AbiEii-AbiEi
Location 3443012..3444531 Replicon chromosome
Accession NZ_CP115911
Organism Xanthomonas oryzae pv. oryzae strain NE-8

Toxin (Protein)


Gene name rlegT Uniprot ID A0A0K0GMB6
Locus tag PEV90_RS16195 Protein ID WP_011259680.1
Coordinates 3443012..3443935 (-) Length 308 a.a.

Antitoxin (Protein)


Gene name rlegA Uniprot ID A0A854CLN1
Locus tag PEV90_RS16200 Protein ID WP_011409027.1
Coordinates 3443932..3444531 (-) Length 200 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PEV90_RS16170 (PEV90_16170) 3439205..3439737 + 533 Protein_3094 methyltransferase domain-containing protein -
PEV90_RS16175 (PEV90_16175) 3439754..3440242 - 489 WP_011409022.1 hypothetical protein -
PEV90_RS16180 (PEV90_16180) 3440337..3441302 + 966 Protein_3096 IS1595-like element ISXo5 family transposase -
PEV90_RS16185 (PEV90_16185) 3441754..3441996 - 243 WP_011409025.1 hypothetical protein -
PEV90_RS16190 (PEV90_16190) 3442462..3442932 + 471 WP_228383551.1 helix-turn-helix domain-containing protein -
PEV90_RS16195 (PEV90_16195) 3443012..3443935 - 924 WP_011259680.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
PEV90_RS16200 (PEV90_16200) 3443932..3444531 - 600 WP_011409027.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein Antitoxin
PEV90_RS16205 (PEV90_16205) 3444896..3445186 + 291 WP_228329665.1 FaeA/PapI family transcriptional regulator -
PEV90_RS16210 (PEV90_16210) 3445218..3445793 + 576 WP_011409029.1 BrxE family protein -
PEV90_RS16215 (PEV90_16215) 3445775..3446806 - 1032 WP_042465093.1 IS630 family transposase -
PEV90_RS16220 (PEV90_16220) 3447305..3447595 + 291 WP_011409031.1 hypothetical protein -
PEV90_RS16225 (PEV90_16225) 3447576..3448043 + 468 WP_181718264.1 hypothetical protein -
PEV90_RS16235 (PEV90_16235) 3448313..3448849 + 537 WP_011409032.1 lipocalin family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(41-269)

Antitoxin

Transcriptional regulator, AbiEi antitoxin

(7-52)


Sequences

Toxin        


Download         Length: 308 a.a.        Molecular weight: 34114.16 Da        Isoelectric Point: 5.4588

>T267488 WP_011259680.1 NZ_CP115911:c3443935-3443012 [Xanthomonas oryzae pv. oryzae]
MNEPDKSRRTVAASVRARLLNKARAERLDFNLLLTRYALERVLYRLSVSEQQGQFLLKGALLFDIWFDIPHRPTHDADLL
GFGSTEIPHLEDLFRRISQIASDDGIVFQADSVKAAEIRKEANYAGVRVTMIGLLDGARCTVQIDIGFGDAVTPGPDNVQ
YPVILDGMPQPQLRVYPRYTVVAEKLEAMVKLGILNSRMKDYFDLWVLAGHSDFDGAVLATAIRATFECRGTAIPPGAPL
GLTDEFGLDEQKTKQWQAFLRKNTLEPMPLTTVIEALREFVLPVLAALAAGEGFDRQWRAGAGWDAA

Download         Length: 924 bp

Antitoxin


Download         Length: 200 a.a.        Molecular weight: 22037.74 Da        Isoelectric Point: 10.1240

>AT267488 WP_011409027.1 NZ_CP115911:c3444531-3443932 [Xanthomonas oryzae pv. oryzae]
MDTTVDKLLELVRTRGLLRPHDLAPLGIPRVALTRAVRRGQLERVGRGLYGLVARPVSAHGTLAEVARRVPKGVVCLLSA
LRVHDLTTQAPFEVWLAIDNKAAAPKLDYPPLRLVRFSGPALSEGVEEHVVDGVPVHVTSVAKTVADCFKYRNKIGIDVA
LEALREAWVARRMTSDEIWHYAKIDRVANVMRPYLESLA

Download         Length: 600 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0K0GMB6

Antitoxin

Source ID Structure
AlphaFold DB A0A854CLN1

References