Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | pmenTA/darT(toxin) |
| Location | 1075735..1076480 | Replicon | chromosome |
| Accession | NZ_CP115911 | ||
| Organism | Xanthomonas oryzae pv. oryzae strain NE-8 | ||
Toxin (Protein)
| Gene name | pmenT | Uniprot ID | - |
| Locus tag | PEV90_RS05170 | Protein ID | WP_199285672.1 |
| Coordinates | 1076151..1076480 (-) | Length | 110 a.a. |
Antitoxin (Protein)
| Gene name | pmenA | Uniprot ID | - |
| Locus tag | PEV90_RS05165 | Protein ID | WP_011407754.1 |
| Coordinates | 1075735..1076154 (-) | Length | 140 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PEV90_RS05145 (PEV90_05145) | 1072023..1072349 | - | 327 | Protein_973 | hypothetical protein | - |
| PEV90_RS05150 (PEV90_05150) | 1072651..1073886 | + | 1236 | WP_011257570.1 | ISL3-like element ISXoo13 family transposase | - |
| PEV90_RS05155 (PEV90_05155) | 1073924..1074604 | - | 681 | WP_011257926.1 | phosphate phosphatase | - |
| PEV90_RS05160 (PEV90_05160) | 1074715..1075683 | - | 969 | WP_011258188.1 | IS5-like element ISXo1 family transposase | - |
| PEV90_RS05165 (PEV90_05165) | 1075735..1076154 | - | 420 | WP_011407754.1 | macro domain-containing protein | Antitoxin |
| PEV90_RS05170 (PEV90_05170) | 1076151..1076480 | - | 330 | WP_199285672.1 | DUF4433 domain-containing protein | Toxin |
| PEV90_RS05175 (PEV90_05175) | 1076583..1077902 | + | 1320 | WP_011407756.1 | IS701 family transposase | - |
| PEV90_RS05180 (PEV90_05180) | 1077946..1078281 | - | 336 | WP_011407757.1 | DarT ssDNA thymidine ADP-ribosyltransferase family protein | - |
| PEV90_RS05185 (PEV90_05185) | 1078613..1079539 | - | 927 | WP_011257932.1 | Grx4 family monothiol glutaredoxin | - |
| PEV90_RS05190 (PEV90_05190) | 1079585..1080376 | + | 792 | WP_011407758.1 | polysaccharide deacetylase family protein | - |
| PEV90_RS05200 (PEV90_05200) | 1080678..1081349 | - | 672 | WP_011407759.1 | class I SAM-dependent methyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | IScluster/Tn | - | - | 1072651..1077902 | 5251 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 110 a.a. Molecular weight: 13145.86 Da Isoelectric Point: 7.1160
>T267486 WP_199285672.1 NZ_CP115911:c1076480-1076151 [Xanthomonas oryzae pv. oryzae]
MHHVAERRWPFLFTDSHAYCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHLPLDGLRGIVCHT
DGLKQTIERQLQERNLKLPVHTRTDWYFR
MHHVAERRWPFLFTDSHAYCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHLPLDGLRGIVCHT
DGLKQTIERQLQERNLKLPVHTRTDWYFR
Download Length: 330 bp
Antitoxin
Download Length: 140 a.a. Molecular weight: 15607.02 Da Isoelectric Point: 6.4733
>AT267486 WP_011407754.1 NZ_CP115911:c1076154-1075735 [Xanthomonas oryzae pv. oryzae]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLIENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLGNL
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLIENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLGNL
Download Length: 420 bp
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|