Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2734033..2734242 | Replicon | chromosome |
| Accession | NZ_CP115874 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain WYTS.MG41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2734046..2734149 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2734033..2734242 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PBS85_RS12885 (PBS85_12885) | 2730301..2731749 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PBS85_RS12890 (PBS85_12890) | 2731856..2732095 | + | 240 | WP_003859885.1 | YebV family protein | - |
| PBS85_RS12895 (PBS85_12895) | 2732130..2732774 | - | 645 | WP_033486807.1 | protein-serine/threonine phosphatase | - |
| PBS85_RS12900 (PBS85_12900) | 2732942..2733922 | + | 981 | WP_271138946.1 | VirK/YbjX family protein | - |
| PBS85_RS12905 (PBS85_12905) | 2733968..2734165 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2734033..2734242 | + | 210 | - | - | Antitoxin |
| - | 2734046..2734149 | - | 104 | - | - | Toxin |
| PBS85_RS12910 (PBS85_12910) | 2734291..2734629 | - | 339 | WP_033486805.1 | YebY family protein | - |
| PBS85_RS12915 (PBS85_12915) | 2734646..2735515 | - | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| PBS85_RS12920 (PBS85_12920) | 2735517..2735888 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| PBS85_RS12925 (PBS85_12925) | 2736026..2736256 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| PBS85_RS12930 (PBS85_12930) | 2736368..2737018 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| PBS85_RS12935 (PBS85_12935) | 2737042..2737704 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T267447 NZ_CP115874:c2734149-2734046 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT267447 NZ_CP115874:2734033-2734242 [Enterobacter hormaechei subsp. steigerwaltii]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
